There should be very little noise from the manual transmission. Some owners have had some internal transmission bearing failures, resulting in the trans being replaced. Some believe that the quantity of lubricant was insufficient to lubricate a specific shaft and bearing in the trans case. There are a few threads about this on this Forum, and on the Cruze Forum too.
The hard shifting when cold is also an issue, and is often related to the type/viscosity of lubricant in the transmission; again, there are a few related threads on this issue also.